PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482648.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 501aa    MW: 53718.2 Da    PI: 8.3087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055880123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_016482648.1 58 FVCEICNKGFQRDQNLQLHRRGH 80
                    89*******************88 PP

2zf-C2H216.72.1e-05134156123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k +  +s+ k H++t+
  XP_016482648.1 134 FKCERCTKKYAVQSDWKAHMKTC 156
                     89*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.13E-75780No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.0E-55880IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035525099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.13E-7129155No hitNo description
SMARTSM0035563134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MADMENSSSM TVAGSSLEET ISQQNFPVKK KRNLPGNPDP EAEVIALSPK ALMATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVKKRVYV CPEATCIHHD PSRALGDLTG  120
IKKHFCRKHG EKKFKCERCT KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS RRDSFVTHRA  180
FCDALAQESA RAQPMGITNT EENLKADEAV TSSSSPPPQP LTPSTGVLSP VLSIQSSELP  240
ADNQNQAGVQ LQAAQGTTTP VSTTTVTATT ISTTASTTGP SSSKVFASVF PSSSTSVGHP  300
HSSYSNILCA IGPEQMTAIE PMSLSLSSSF YLSANNGSTL FQDHTGHVQH YGSTTQPALS  360
ATALLQKAAQ MGATSSNNSF LRGLGLAMSS TSTSDNISRV KLENNVELPG LGIPLPSNGP  420
SGQWTDLMMG PSHESMMFGN KPPTLDFLGL GNDANVTSSN GFSALLSSMD GGFGVATSSY  480
GGVATRGQPW DDHSDRKPSM L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482648.10.0PREDICTED: protein indeterminate-domain 2-like isoform X1
SwissprotQ9SCQ61e-136IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLM1A2F20.0M1A2F2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000131740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-113indeterminate(ID)-domain 2